Creating a SOM Cluster Plot

Overview

A SOM cluster plot makes it possible to visually 'drill down' into the a SOM cluster to view the individual member profiles.

Actions

1. Click a SOM experiment in the Experiments navigator. The item is highlighted.

2. Select Cluster Plot from the Clustering menu, or right-click on the item and select Cluster Plot from the shortcut menu. A cluster plot of the SOM experiment is displayed.

Using the Plot

Selecting Items

Plot Functions

Lookup Gene

Annotate

Create Gene List from Selection

Exporting a .PNG Image

Customizing the Plot

Configuring Plot Components

Resizing a Plot

Related Topics:

Overview of Self-Organizing Maps (SOMs)

Tutorial 4: Self-Organizing Maps