Commercial Desktop Microarray Analysis Product:	GeneLinker(TM) Platinum	GeneLinker(TM) Gold	Silicon Genetics GeneSpring(TM)	Axon Acuity(TM)	Strand Genomics Avadis(TM)	BioDiscovery GeneSight(TM)	Iobion ArrayAssist(TM)	Applied Maths GeneMaths(TM)
Licensing
Price ($US)	$4995	$995	$5000	$4000	Not available.	Not available.	$3154	$6200
Permanent License
Data Import
Affymetrix
GenePix
CodeLink
Quantarray
Scanarray
Agilent XML
Addition of Custom Formats
Preprocessing
Traditional normalizations (log etc.)
Lowess normalization
Summary Statistics
ANOVA
False Discovery Rate
Bonferroni Correction
Filtering
Gene lists
Maximum culling and Range culling
N-Fold culling
Spotted array N-Fold culling
Analysis
K-Means clustering
Hierarchical clustering
Self Organizing Maps
Principal Components Analysis
Profile Matching
Classification
Committee of Learners architecture
Artificial Neural Networks
Support Vector Machines
Bayesian Classifier
Association Mining
Visualization
Matrix Plots
Two-way Matrix Plots
Scatter plots, centroid plots, cluster plots
Reporting
Workflow reports
PNG Graphics Export
PDF Graphics Export
SVG Graphics Export
Coloring by variables and gene lists
Other
Experiment Repository	mySQL, DB2, Oracle	mySQL, DB2, Oracle	Proprietary	Microsoft SQLServer, Oracle		Proprietary
External API or Scripting

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